Vyacheslav Yurchenko

List of publications

    2024

  1. Zavataro, A.L.E., Skýpalová, K., Vergara, P.O.T., Silva, F.M, Butenko, A., Yurchenko, V., Kostygov, A.Y., Alves, J.M.P. The genome of the endosymbiont-harboring trypanosomatid Kentomonas sorsogonicus. Protistology, 2024, (accepted)
  2. Afonin, D.A., Gerasimov, E.S., Škodová-Sveráková, I., Záhonová, K., Gahura, O., Albanaz, A.T.S., Myšková, E., Bykova, A., Paris, Z., Lukeš, J., Opperdoes, F.R., Horváth, A., Zimmer, S.L.*, Yurchenko, V.* Blastocrithidia nonstop mitochondrial genome and its expression are remarkably insulated from nuclear codon reassignment. Nucl. Acids Res., 2024, (accepted). * Co-correspondent authors. PMID: 38452217. doi:10.1093/nar/gkae168
  3. Rogozin, I.B., Saura, A., Poliakov, E., Bykova, A., Roche-Lima, A., Pavlov, Y.I., Yurchenko, V.* Properties and mechanisms of deletions, insertions, and substitutions in the evolutionary history of SARS-CoV-2. Int. J. Mol. Sci., 2024, 25: 3696. * Correspondent author. PMID: . PDF doi:10.3390/ijms25073696
  4. Usarov, G.X., Turitsin, V.S., Sattarova, X.G., Sádlová, J., ugli Mustanov, J.A., Saura, A., Yurchenko, V.* Phlebotomine sand fly (Diptera: Phlebotominae) diversity in the foci of cutaneous leishmaniasis in the Surxondaryo Region of Uzbekistan: 50 years on. Parasitol. Res., 2024, 123: 170. * Correspondent author. PMID: 38526739. PDF doi:10.1007/s00436-024-08191-4
  5. Chmelová, L′., Záhonová, K., Albanaz, A.T.S., Hrebenyk, L., Horváth, A., Yurchenko, V.*, Škodová-Sveráková, I.* Distribution and functional analysis of isocitrate dehydrogenases across kinetoplastids. Genome Biol. Evol., 2024, 16(3): evae042. * Co-correspondent authors. PMID: 38447055. PDF doi:10.1093/gbe/evae042
  6. Opperdoes, F.R., Záhonová, K., Škodová-Sveráková, I., Bučková, B., Chmelová, L′., Lukeš, J., Yurchenko, V.* In silico prediction of the metabolism of Blastocrithidia nonstop, a trypanosomatid with non-canonical genetic code. BMC Genomics, 2024, 25(1): 184. * Correspondent author. PMID: 38365628. PDF doi:10.1186/s12864-024-10094-8
  7. Kostygov, A.Y.*, Albanaz, A.T.S., Butenko, A., Gerasimov, E.S., Lukeš, J., Yurchenko, V.* Phylogenetic framework to explore trait evolution in Trypanosomatidae. Trends Parasitol., 2024, 40(2): 96-99. * Co-correspondent authors. PMID: 38065790. doi:10.1016/j.pt.2023.11.009
  8. Kostygov, A.Y.*, Chmelová, L′., Reichl, J., Jászayová, A., Votýpka, J., Fuehrer, H.-P., Yurchenko, V.* Parasites of firebugs in Austria with focus on the "micro"-diversity of the cosmopolitan trypanosomatid Leptomonas pyrrhocoris. Parasitol. Res., 2024, 123(1): 27. * Co-correspondent authors. PMID: 38072883. PDF doi:10.1007/s00436-023-08080-2
  9. 2023

  10. Klocek, D., Grybchuk, D., Macedo, D.H., Galan, A., Votýpka, J., Schmid-Hempel, R., Schmid-Hempel, P., Yurchenko, V.*, Kostygov, A.Y.* RNA viruses of Crithidia bombi, a parasite of bumblebees. J. Invertebr. Pathol., 2023, 201: 107991. * Co-correspondent authors. PMID: 37714407. PDF doi:10.1016/j.jip.2023.107991
  11. Dutra-Rêgo, F., da Silva, E.S., Lopes, V.V., Teixeira-Neto, R.G., Belo, V.S., Fonseca Júnior, A.A., Pereira, D.A., Pena, H.P., Laurenti, M.D., Flores, G.V.A., da Matta, V.L.R., Chouman, I.H., Burrin, T.B., Pacheco, C.M.S., Barrouin-Melo, S.M., de Pinho, F.A., de Andrade, H.A., Nunes, R.V., Gontijo, C.M.F., Soccol, V.T., Klocek, D., Grybchuk, D., Macedo, D.H., do Monte-Neto, R.L., Yurchenko, V., Soares, R.P. First report of putative Leishmania RNA virus 2 (LRV2) in Leishmania infantum strains from canine and human visceral leishmaniasis cases in the Southeast of Brazil. Mem. Inst. Oswaldo Cruz, 2023, 118: e230071. PMID: 37729273. PDF doi:10.1590/0074-02760230071
  12. Macedo, D.H., Grybchuk, D., Režnarová, J., Votýpka, J., Klocek, D., Yurchenko, T., Ševčík, J., Magri, A., Urda Dolinská, M., Záhonová, K., Lukeš, J., Servienė, E., Jászayová, A., Serva, S., Malysheva, M.N., Frolov, A.O., Yurchenko, V.*, Kostygov, A.Y.* Diversity of RNA viruses in the cosmopolitan monoxenous trypanosomatid Leptomonas pyrrhocoris. BMC Biol., 2023, 21(1): 191. * Co-correspondent authors. PMID: 37697369. PDF doi:10.1186/s12915-023-01687-y
  13. Albanaz, A.T.S., Carrington, M., Frolov, A.O., Ganyukova, A.I., Gerasimov, E.S., Kostygov, A.Y., Lukeš, J., Malysheva, M.N., Votýpka, J., Zakharova, A., Záhonová, K., Zimmer, S.L., Yurchenko, V.*, Butenko, A.* Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae. BMC Genomics, 2023, 24: 471. * Co-correspondent authors. PMID: 37605127. PDF doi:10.1186/s12864-023-09591-z
  14. Gerasimov, E.S.*, Novozhilova, T.S., Zimmer, S.L., Yurchenko, V.* Kinetoplast genome of Leishmania spp. is under strong purifying selection. Trop. Med. Infect. Dis., 2023, 8(8): 384. * Co-correspondent authors. PMID: 37624322. PDF doi:10.3390/tropicalmed8080384
  15. Klocek, D., Grybchuk, D., Tichá, L., Votýpka, J., Volf, P., Kostygov, A.Y.*, Yurchenko, V.* Evolution of RNA viruses in trypanosomatids: new insights from the analysis of Sauroleishmania. Parasitol. Res., 2023, 122(10): 2279-2286. * Co-correspondent authors. PMID: 37490143. PDF doi:10.1007/s00436-023-07928-x
  16. Albanaz, A.T.S., Butenko, A., Kostygov, A.Y., Votýpka, J., Yurchenko, V. Transcriptome of Lafontella sp., an obscure relative of Phytomonas and Herpetomonas. Protistology, 2023, 17(2): 109-117. PDF doi:10.21685/1680-0826-2023-17-2-6
  17. Bykova, A., Saura, A., Glazko, G.V., Roche-Lima, A., Yurchenko, V.*, Rogozin, I.B. The 29-nucleotide deletion in SARS-CoV: truncated versions of ORF8 are under purifying selection. BMC Genomics, 2023, 24(1): 387. * Co-correspondent authors. PMID: 37430204. PDF doi:10.1186/s12864-023-09482-3
  18. Zakharova, A., Tashyreva, D., Butenko, A., Morales, J., Saura, A., Svobodová, M., Poschmann, G., Nandipati, S., Zakharova, A., Noyvert, D., Gahura, O., Týč, J., Stühler, K., Kostygov, A.Y.*, Nowack, E.C.M., Lukeš, J., Yurchenko, V.* A neo-functionalized homolog of host transmembrane protein controls localization of bacterial endosymbionts in the trypanosomatid Novymonas esmeraldas. Curr. Biol., 2023, 33(13): 2690-2701. * Co-correspondent authors. PMID: 37201521. doi:10.1016/j.cub.2023.04.060
  19. Jászayová, A., Režnarová, J., Chovancová, G., Kostygov, A.Y., Yurchenko, V., Antolová, D., Zwijacz-Kozica, T., Csanády, A., Hurníková, Z. A study of oribatid mites as potential intermediate hosts of anoplocephalid tapeworms of Tatra chamois and Tatra marmots from the Tatra Mountains, Central Europe, and report of a new intermediate host for Andrya cuniculi, the parasite of Leporidae. Life, 2023, 13(4): 955. PMID: 37109484. PDF doi:10.3390/life13040955
  20. Novozhilova, T.S., Chistyakov, D.S., Akhmadishina, L.V., Lukashev, A.N., Gerasimov, E.S.*, Yurchenko, V.* Genomic analysis of Leishmania turanica strains from different regions of Central Asia. PLoS Negl. Trop. Dis., 2023, 17(3): e0011145. * Co-correspondent authors. PMID: 36877735. PDF doi:10.1371/journal.pntd.0011145
  21. Yurchenko, V.*, Chistyakov, D.S., Akhmadishina, L.V., Lukashev, A.N., Sádlová, J., Strelkova, M.V.* Revisiting epidemiology of leishmaniasis in Central Asia: lessons learnt. Parasitology, 2023, 150(2): 129-136. * Co-correspondent authors. PMID: 36453145. PDF doi:10.1017/S0031182022001640
  22. Kachale, A., Pavlíková, Z., Nenarokova, A., Roithová, A., Durante, I.M., Miletínová, P., Záhonová, K., Nenarokov, S., Votýpka, J., Horáková, E., Ross, R.L., Yurchenko, V., Beznosková, P., Paris, Z., Valášek, L.S., Lukeš, J. Short tRNA anticodon stem and mutant eRF1 allow stop codon reassignment. Nature, 2023, 613(7945): 751-758. (Cover paper). PMID: 36631608. PDF doi:10.1038/s41586-022-05584-2
  23. Rogozin, I.B.*, Saura, A., Bykova, A., Brover, V., Yurchenko, V.* Deletions across the SARS-CoV-2 genome: molecular mechanisms and putative functional consequences of deletions in accessory genes. Microorganisms, 2023, 11: 229. * Co-correspondent authors. PMID: 36677521. PDF doi:10.3390/microorganisms11010229
  24. 2022

  25. Magri, A.*, Bianchi, C., Chmelová, L′., Caffara, M., Galuppi, R., Fioravanti, M., Yurchenko, V.*, Kostygov, A.Y.* Roe deer (Capreolus capreolus) are a novel potential reservoir for human visceral leishmaniasis in the Emilia-Romagna region of Northeastern Italy. Int. J. Parasitol., 2022, 52(12): 745-750. * Co-correspondent authors. (Cover paper). PMID: 36265672. PDF doi:10.1016/j.ijpara.2022.09.002
  26. Kostygov, A.Y., Malysheva, M.N., Ganyukova, A.I., Razygraev, A.V., Drachko, D.O., Yurchenko, V., Agasoi, V.V., Frolov, A.O. The roles of mosquitoes in the circulation of monoxenous trypanosomatids in temperate climates. Pathogens, 2022, 11: 1326. PMID: 36422578. PDF doi:10.3390/pathogens11111326
  27. Gerasimov, E.S., Afonin, D.A., Korzhavina, O.A., Lukeš, J., Low, R., Hall, N., Tyler, K., Yurchenko, V.*, Zimmer, S.* Mitochondrial RNA editing in Trypanoplasma borreli: new tools, new revelations. Comput. Struct. Biotechnol. J., 2022, 20: 6388-6402. * Co-correspondent authors. PMID: 36420151. PDF doi:10.1016/j.csbj.2022.11.023
  28. Procházková, M., Füzik, T., Grybchuk, D., Yurchenko, V., Plevka, P. Virion structure of Leishmania RNA virus 1. Virology, 2022, 577: 149-154. PMID: 36371873. PDF doi:10.1016/j.virol.2022.09.014
  29. Belinky, F., Bykova, A. , Yurchenko, V.*, Rogozin, I. B.* No evidence for widespread positive selection on double substitutions within codons in primates and yeasts. Front. Genetics, 2022, 13: 991249. * Co-correspondent authors. PMID: 36159983. PDF doi:10.3389/fgene.2022.991249
  30. Saura, A., Zakharova, A., Klocek, D., Gerasimov, E.S., Butenko, A., Macedo, D.H., Servienė, E., Zagirova, D., Meshcheryakova, A., Rogozin, I.B., Serva, S., Kostygov, A.Y.*, Yurchenko, V.* Elimination of LRVs elicits different responses in Leishmania spp. mSphere, 2022, 7(4): e00335-22. * Co-correspondent authors. PMID: 35943162. PDF doi:10.1128/msphere.00335-22
  31. Grybchuk, D., Procházková, M., Füzik, T., Konovalovas, A., Serva, S., Yurchenko, V., Plevka, P. Structures of L-BC virus and its open particle provide insight into Totivirus capsid assembly. Commun. Biol., 2022, 5(1): 847. PMID: 35986212. PDF doi:10.1038/s42003-022-03793-z
  32. Ennes-Vidal, V., Antunes, D., Poláková, E., Yurchenko, V., Oliveira, S.S.C., Faria da Mota, F., Guimaraes, A.C.R., Caffarena, E.R., Santos , A.L.S, Branquinha, M.H., d’Avila-Levy, C.M. Differences in charge distribution in Leishmania tarentolae leishmanolysin result in a reduced enzymatic activity. Int. J. Mol. Sci., 2022, 23: 7660. PMID: 35887004. PDF doi:10.3390/ijms23147660
  33. Zakharova, A., Albanaz, A.T.S., Opperdoes, F.R., Škodová-Sveráková, I., Zagirova, D., Saura, A., Chmelová, L’., Gerasimov, E.S., Leštinová, T., Bečvář, T., Sádlová, J., Volf, P., Lukeš, J., Horváth, A., Butenko, A., Yurchenko, V.* Leishmania guyanensis M4147 as a new LRV1-bearing model parasite: phosphatidate phosphatase 2-like protein controls cell cycle progression and intracellular lipid content. PLoS Negl. Trop. Dis., 2022, 16(6): e0010510. * Correspondent author. PMID: 35749562. PDF doi:10.1371/journal.pntd.0010510
  34. Gerasimov, E.S., Ramirez-Barrios, R., Yurchenko, V., Zimmer, S.L. Trypanosoma cruzi strain and starvation-driven mitochondrial RNA editing and transcriptome variability. RNA, 2022, 28(7): 993-1012. PMID: 35470233. PDF doi:10.1261/rna.079088.121
  35. Kostygov, A.Y., Frolov, A.O., Malysheva, M.N., Ganyukova, A.I., Drachko, D., Yurchenko, V., Agasoy, V.V. Development of two species of the Trypanosoma theileri complex in tabanids. Parasit. Vectors, 2022, 15: 95. PMID: 35313955. PDF doi:10.1186/s13071-022-05212-y
  36. Chmelová, L’., Bianchi, C., Albanaz, A.T.S., Režnarová, J., Wheeler, R., Kostygov, A.Y., Kraeva, N., Yurchenko, V. Comparative analysis of three trypanosomatid catalases of different origin. Antioxidants, 2022, 11: 46. * Correspondent author. PMID: 35052550. PDF doi:10.3390/antiox11010046
  37. 2021

  38. Poláková, E., Albanaz, A.T.S., Zakharova, A., Novozhilova, T.S., Gerasimov, E.S., Yurchenko, V.* Ku80 is involved in telomere maintenance but dispensable for genomic stability in Leishmania mexicana. PLoS Negl. Trop. Dis., 2021, 15(12): e0010041. * Correspondent author. PMID: 34965251. PDF doi:10.1371/journal.pntd.0010041
  39. Kostygov, A.Y.*; Grybchuk, D., Kleschenko, Y., Chistyakov, D.S., Lukashev, A.N., Gerasimov, E.S., Yurchenko, V.* Analyses of Leishmania-LRV co-phylogenetic patterns and evolutionary variability of viral proteins. Viruses, 2021, 13(11): 2305. * Co-correspondent authors. PMID: 34835111. PDF doi:10.3390/v13112305
  40. Yurchenko, V.*, Butenko, A., Kostygov, A.Y.* Genomics of Trypanosomatidae: where we stand and what needs to be done? Pathogens, 2021, 10: 1124. * Co-correspondent authors. PMID: 34578156. PDF doi:10.3390/pathogens10091124
  41. Zakharova, A., Saura, A., Butenko, A., Podešvová, L., Warmusová, S., Kostygov, A.Y., Nenarokova, A., Lukeš, J., Opperdoes, F.R., Yurchenko, V.* A new model trypanosomatid Novymonas esmeraldas: genomic perception of its "Candidatus Pandoraea novymonadis" endosymbiont. mBio, 2021, 12(4): e01606-21. * Correspondent author. PMID: 34399629. PDF doi:10.1128/mBio.01606-21
  42. Kostygov, A.Y.*, Alves, J.M.P.*, Yurchenko, V.* Editorial: symbioses between protists and bacteria/archaea. Front. Microbiol., 2021, 12: 709184. * Co-correspondent authors. PMID: 34394058. PDF doi:10.3389/fmicb.2021.709184
  43. Konorov, E.A., Yurchenko, V., Patraman, I.V., Lukashev, A.N., Oyun, N.Y. The effects of genetic drift and genomic selection on differentiation and local adaptation of the introduced populations of Aedes albopictus in southern Russia. Peer J., 2021, 9: e11776. PMID: 34327056. PDF doi:10.7717/peerj.11776
  44. Poláková, E., Záhonová, K., Albanaz, A.T.S., Butenko, A., Lukeš, J., Yurchenko, V.* Diverse telomeres in trypanosomatids. Parasitology, 2021, 148: 1254-1270. * Correspondent author. PMID: 33612129. PDF doi:10.1017/S0031182021000378
  45. Čermáková, P., Maďarová, A., Baráth, P., Bellová, J., Yurchenko, V., Horváth, A. Differences in mitochondrial NADH dehydrogenase activities in trypanosomatids. Parasitology, 2021, 148: 1161-1170. PMID: 33407966. PDF doi:10.1017/S0031182020002425
  46. Skalický, T., Alves, J.M.P., Morais, A.C., Režnarová, J., Butenko, A., Lukeš, J., Serrano, M.G., Buck, G.A., Teixeira, M.M.G., Camargo, E.P., Sanders, M., Cotton, J.A., Yurchenko, V., Kostygov,A.Y. Endosymbiont capture, a repeated process of endosymbiont transfer with replacement in trypanosomatids Angomonas spp. Pathogens, 2021, 10: 702. PMID: 34200026. PDF doi:10.3390/pathogens10060702
  47. Rogozin, I.B., Roche-Lima, A., Tyryshkin, K., Carrasquillo-Carrión, K., Lada, A.G., Poliakov, L.Y., Schwartz, E., Saura, A., Yurchenko, V.*, Cooper, D.N., Panchenko, A.R., Pavlov, Y.I.* DNA methylation, deamination and translesion synthesis combine to generate footprint mutations in cancer driver genes in B-cell derived lymphomas and other cancers. Front. Genetics, 2021, 12: 671866. * Co-correspondent authors. PMID: 34093666. PDF doi:10.3389/fgene.2021.671866
  48. Frolov, A.O.*, Kostygov,A.Y.*, Yurchenko, V.* Development of monoxenous trypanosomatids and phytomonads in insects. Trends Parasitol., 2021, 37(6): 538-551. * Co-correspondent authors. PMID: 33714646. PDF doi:10.1016/j.pt.2021.02.004
  49. Gerasimov, E.S., Gasparyan, A.A., Afonin, D.A., Zimmer, S.L., Kraeva, N., Lukeš, J., Yurchenko, V., Kolesnikov, A. Complete minicircle genome of Leptomonas pyrrhocoris reveals a source of its non-canonical mitochondrial RNA editing events. Nucl. Acids Res., 2021, 49(6): 3354-3370. PMID: 33660779. PDF doi:10.1093/nar/gkab114
  50. Albanaz, A.T.S.; Gerasimov, E.S.; Shaw, J.J.; Sádlová, J.; Lukeš, J.; Volf, P.; Opperdoes, F.R.; Kostygov, A.Y.; Butenko, A.*; Yurchenko, V.* Genome analysis of Endotrypanum and Porcisia spp., closest phylogenetic relatives of Leishmania, highlights the role of amastins in shaping pathogenicity. Genes. 2021, 12(3): 444. * Co-correspondent authors. PMID: 33804709. PDF doi:10.3390/genes12030444
  51. Charyyeva, A., Çetinkaya, Ü., Özkan. B., Şahin, S., Yaprak, N., Şahin, I., Yurchenko, V.*, Kostygov, A.Y.* Genetic diversity of Leishmania tropica: unexpectedly complex distribution pattern. Acta Trop., 2021, 218: 105888. * Co-correspondent authors. PMID: 33713626. PDF doi:10.1016/j.actatropica.2021.105888
  52. Sádlová, J., Podešvová, L., Bečvář, T., Bianchi, C., Gerasimov, E.S., Saura, A., Glanzová, K., Leštinová, T., Matveeva, N.S., Chmelová, L., Mlacovská, D., Spitzová, T., Vojtková, B., Volf, P., Yurchenko, V.*, Kraeva, N.* Catalase impairs Leishmania mexicana development and virulence. Virulence, 2021, 12(1): 852-867. * Co-correspondent authors. PMID: 33724149. PDF doi:10.1080/21505594.2021.1896830
  53. Kostygov, A.Y., Karnkowska, A., Votýpka, J., Tashyreva, D., Maciszewski, K., Yurchenko, V., Lukeš, J. Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses. Open Bio., 2021, 11: 200407. PMID: 33715388. PDF doi:10.1098/rsob.200407
  54. Lukeš, J., Tesařová, M., Yurchenko, V., Votýpka, J. Characterization of a new cosmopolitan genus of trypanosomatid parasites, Obscuromonas gen. nov. (Blastocrithidiinae subfam. nov.). Eur. J. Protistol., 2021, 79: 125778. PMID: 33706204. PDF doi:10.1016/j.ejop.2021.125778
  55. Belinky, F., Ganguly, I., Poliakov, E., Yurchenko, V.*, Rogozin, I.B.* Analysis of stop codons within prokaryotic protein-coding genes suggests frequent readthrough events. Int. J. Mol. Sci., 2021, 22: 1876. * Co-correspondent authors. PMID: 33672790. PDF doi:10.3390/ijms22041876
  56. Opperdoes, F.R.*, Butenko, A., Zakharova, A., Gerasimov, E.S., Zimmer, S.L., Lukeš, J., Yurchenko, V.* The remarkable metabolism of Vickermania ingenoplastis: genomic predictions. Pathogens, 2021, 10: 68. * Co-correspondent authors. PMID: 33466586. PDF doi:10.3390/pathogens10010068
  57. Procházková, M., Füzik, T., Grybchuk, D., Falginella, F., Podešvová, L., Yurchenko, V., Vácha, R., Plevka, P. Capsid structure of Leishmania RNA virus 1. J. Virol., 2021, 95(3): e01957-20. PMID: 33208443. PDF doi:10.1128/JVI.01957-20
  58. Butenko, A., Hammond, M., Field, M., Ginger, M., Yurchenko, V., Lukeš, J. Reductionist pathways for parasitism in euglenozoans? Expanded datasets provide new insights. Trends Parasitol., 2021, 37(2): 100-116. PMID: 33127331. PDF doi:10.1016/j.pt.2020.10.001
  59. 2020

  60. Durante, I., Butenko, A., Rašková, V., Charyyeva, A., Svobodová, M., Yurchenko, V., Hashimi, H., Lukeš, J. Large-scale phylogenetic analysis of trypanosomatid adenylate cyclases reveals associations with extracellular lifestyle and host-pathogen interplay. Genome Biol. Evol., 2020, 12(12): 2403-2416. PMID: 33104188. PDF doi:10.1093/gbe/evaa226
  61. Kostygov, A.Y., Frolov, A.O., Malysheva, M.N., Ganyukova, A.I., Chistyakova, L.V., Tashyreva, D., Tesařová, M., Spodareva, V.V., Režnarová, J., Macedo, D., Butenko, A., d’Avila-Levy, C.M., Lukeš, J., Yurchenko, V. Vickermania gen. nov., trypanosomatids that use two joined flagella to resist midgut peristaltic flow within the fly host. BMC Biol., 2020, 18: 187. PMID: 33267865. PDF doi:10.1186/s12915-020-00916-y
  62. Ravoitytė, B., Lukša, J., Yurchenko, V., Serva, S., Servienė, E. Saccharomyces paradoxus transcriptional alterations in cells of distinct phenotype and viral dsRNA content. Microorganisms, 2020, 8: 1902. PMID: 33266158. PDF doi:10.3390/microorganisms8121902
  63. Votýpka, J., Kment, P., Yurchenko, V., Lukeš, J. Endangered monoxenous trypanosomatid parasites: a lesson from island biogeography. Biodivers. Conserv., 2020, 29: 3635-3667. PDF doi:10.1007/s10531-020-02041-2
  64. Dobenecker, M.-W., Marcello, J., Becker, A., Rudensky, E., Bhanu, N.V., Carrol, T., Garcia, B.A., Prinjha, R., Yurchenko, V.*, Tarakhovsky, A.* The catalytic domain of the histone methyltransferase NSD2/MMSET is required for the generation of B1 cells in mice. FEBS Lett., 2020, 594: 3324-3337. * Co-correspondent authors. PMID: 32862441. PDF doi:10.1002/1873-3468.13903
  65. Füssy, Z., Záhonová, K., Tomčala, A., Krajčovič, J., Yurchenko, V., Oborník, M., Eliáš, M. The cryptic plastid of Euglena longa defines a new type of nonphotosynthetic plastid organelles. mSphere, 2020, 5(5): e00675-20. (Editor's pick). PMID: 33087518. PDF doi:10.1128/mSphere.00675-20
  66. Rogozin, I.B., Charyyeva, A., Sidorenko, I.A., Babenko, V.N.,Yurchenko, V.* Frequent recombination events in Leishmania donovani: mining population data. Pathogens, 2020, 9: 572. * Correspondent author. PMID: 32679679. PDF doi:10.3390/pathogens9070572
  67. Škodová-Sveráková, I., Záhonová, K., Bučková, B., Füssy, Z., Yurchenko, V., Lukeš, J. Catalase and ascorbate peroxidase in euglenozoan protists. Pathogens, 2020, 9: 317. PMID: 32344595. PDF doi:10.3390/pathogens9040317
  68. Ganyukova, A.I., Frolov, A.O., Malysheva, M.N., Spodareva, V.V., Yurchenko, V., Kostygov, A.Y. A novel endosymbiont-containing trypanosomatid Phytomonas borealis sp. n. from the predatory bug Picromerus bidens (Heteroptera, Pentatomidae). Folia Parasitol., 2020, 67: 004. PMID: 32350156. PDF doi: 10.14411/fp.2020.004
  69. Polanska, N., Ishemgulova, A., Volfová, V., Flegontov, P., Votýpka, J., Yurchenko, V., Volf, P. Sergentomyia schwetzi: salivary gland transcriptome, proteome and enzymatic activities in two lineages adapted to different blood sources. PLoS One, 2020, 15(3): e0230537. PMID: 32208452. PDF doi: 10.1371/journal.pone.0230537
  70. Aphasizheva, I., Alfonzo, J., Carnes, J., Cestari, I., Cruz-Reyes, J., Ulrich Göringer, H., Hajduk, S., Lukeš,J., Madison-Antenucci, S., Maslov, D.A., McDermott, S.M., Ochsenreiter, T., Read, L.K., Salavati, R., Schnaufer, A., Schneider, A., Simpson, L., Stuart, K., Yurchenko, V., Zhou, Z.H., Zíková, A., Zhang, L., Zimmer, S., Aphasizhev, R. Lexis and grammar of mitochondrial RNA processing in trypanosomes. Trends Parasitol., 2020, 36(4): 337-355. PMID: 32191849. PDF doi:10.1016/j.pt.2020.01.006
  71. Horáková, E., Faktorová, D., Kraeva, N., Kaur, B., Van Den Abbeele, J., Yurchenko, V., Lukeš, J. Catalase compromises the development of the insect and mammalian stages of Trypanosoma brucei. FEBS J., 2020, 287: 964-977. PMID: 31593329. PDF doi:10.1111/febs.15083
  72. Alexandre, J., Sádlová, J., Leštinová, T., Vojtková, B., Jančářová, M., Podešvová, L., Yurchenko, V., Dantas-Torres, F., Brandao-Filho, S.P., Volf, P. Experimental infections and co-infections with Leishmania braziliensis and Leishmania infantum in two sand fly species, Lutzomyia migonei and Lutzomyia longipalpis. Sci. Rep., 2020, 10: 3566. PMID: 32108151. PDF doi: 10.1038/s41598-020-60600-7
  73. d’Avila-Levy, C.M., Bearzatto, B., Ambroise, J., Helaers, R., Butenko, A., Yurchenko, V., Morelli, K.A., Santos, H.L.C., Brouillard, P., Grellier, P., Gala, J.-L., Vikkula, M. First draft genome of the trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford Nanopore technology and Illumina sequencing. Trop. Med. Infect. Dis., 2020, 5: 25. PMID: 32069939. PDF doi:10.3390/tropicalmed5010025
  74. Gerasimov, E.S.*, Zamyatnina, K.A., Matveeva, N.S., Rudenskaya, Y.A., Kraeva, N., Kolesnikov, A.A., Yurchenko, V.* Common structural patterns in the maxicircle divergent region of Trypanosomatidae. Pathogens, 2020, 9: 100. * Co-correspondent authors. PMID: 32033466. PDF doi:10.3390/pathogens9020100
  75. Grybchuk, D., Macedo, D.H., Kleschenko, Y., Kraeva, N., Lukashev, A.N., Bates, P.A., Kulich, P., Leštinová, T., Volf, P., Kostygov, A.Y.*, Yurchenko, V.* The first non-LRV RNA virus in Leishmania. Viruses, 2020, 12: 168. * Co-correspondent authors. PMID: 32024293. PDF doi:10.3390/v12020168
  76. Podešvová, L., Leštinová, T., Horáková, E., Lukeš, J., Volf, P., Yurchenko, V.* Suicidal Leishmania. Pathogens, 2020, 9: 79. * Correspondent author. PMID: 31991768. PDF doi:10.3390/pathogens9020079
  77. Frolov, A.O., Malysheva, M.N., Ganyukova, A.I., Spodareva, V.V., Králová, J., Yurchenko, V., Kostygov, A.Y. If host is refractory, insistent parasite goes berserk: trypanosomatid Blastocrithidia raabei in the true bug Coreus marginatus. PLoS One, 2020, 15(1): e0227832. PMID: 31945116. PDF doi:10.1371/journal.pone.0227832
  78. 2019

  79. Králová, J., Grybchuk-Ieremenko, A., Votýpka, J., Novotný, V., Kment, P., Lukeš, J., Yurchenko, V.*, Kostygov, A.Y. Insect trypanosomatids in Papua New Guinea: high endemism and diversity. Int. J. Parasitol., 2109, 49: 1075-1086. * Co-correspondent authors. PMID: 31734337. PDF doi:10.1016/j.ijpara.2019.09.004
  80. He, C.Y., Singh, A., Yurchenko, V. Cell cycle-dependent flagellar disassembly in a firebug trypanosomatid Leptomonas pyrrhocoris. mBio, 2019, 10(6): e02424-19. PMID: 31772053. PDF doi:10.1128/mBio.02424-19
  81. Kraeva, N., Leštinová, T., Ishemgulova, A., Majerová, K., Butenko, A., Vaselek, S., Bespyatykh, J., Charyyeva, A., Spitzová, T., Kostygov, A.Y., Lukeš, J., Volf, P., Votýpka, J., Yurchenko, V.* LmxM.22.0250-encoded dual specificity protein/lipid phosphatase impairs Leishmania mexicana virulence in vitro. Pathogens, 2019, 8: E241. * Correspondent author. PMID: 31744234. PDF doi:10.3390/pathogens8040241
  82. Kleschenko, Y., Grybchuk, D., Matveeva, N.S., Macedo, D.H., Ponirovsky, E.N., Lukashev, A.N., Yurchenko, V.* Molecular characterization of LRV2 in Leishmania major from Uzbekistan. Genes, 2019, 10: E830. * Correspondent author. PMID: 31640177. PDF doi:10.3390/genes10100830
  83. Butenko, A., Kostygov, A.Y., Sádlová, J., Kleschenko, Y., Bečvář, T., Podešvová, L., Macedo, D.H., Žihala, D., Lukeš, J., Bates, P.A., Volf, P., Opperdoes, F.R., Yurchenko, V.* Comparative genomics of Leishmania (Mundinia). BMC Genomics, 2019, 20(1): 726. * Correspondent author. PMID: 31601168. PDF doi:10.1186/s12864-019-6126-y
  84. Gerasimov, E., Zemp, N., Schmid-Hempel, R., Schmid-Hempel, P.*, Yurchenko, V.* Genomic variation among strains of Crithidia bombi and C. expoeki. mSphere, 2019, 4(5): e00482-19. * Co-correspondent authors. PMID: 31511368. PDF doi:10.1128/mSphere.00482-19
  85. Bianchi, C., Kostygov, A.Y., Kraeva, N., Záhonová, K., Horáková, E., Sobotka, R., Lukeš, J., Yurchenko, V.* An enigmatic catalase of Blastocrithidia. Mol. Biohem. Parasitol., 2019, 232: 111199. * Correspondent author. PMID: 31276694. PDF doi:10.1016/j.molbiopara.2019.111199
  86. Nenarokova, A., Záhonová, K., Krasilnikova, M., Gahura, O., McCulloch, R., Zíková, A., Yurchenko, V., Lukeš, J. Causes and effects of loss of classical non-homologous end joining pathway in parasitic eukaryotes. mBio, 2019, 10(4): e01541-19. (Editor's pick). PMID: 31311886. PDF doi:10.1128/mBio.01541-19
  87. Votýpka, J., Kment, P., Kriegová, E., Vermeji, M., Keeling, P., Yurchenko, V., Lukeš, J. High prevalence and endemism of trypanosomatids on a small carribean island. J. Euk. Microbiol., 2019, 66: 600-607. PMID: 30480347. PDF doi:10.1111/jeu.12704
  88. Frolov, A.O, Malysheva, M.N., Ganyukova, A.I., Spodareva, V.V., Yurchenko, V., Kostygov, A.Y. Development of Phytomonas lipae sp. n. (Kinetoplastea: Trypanosomatidae) in the true bug Coreus marginatus (Heteroptera: Coreidae) and insights into the evolution of life cycles in the genus Phytomonas. PLoS One, 2019, 14(4): e0214484. PMID: 30943229. PDF doi:10.1371/journal.pone.0214484
  89. Kostygov, A.Y., Butenko, A., Yurchenko, V.* On monoxenous trypanosomatids from lesions of immunocompetent patients with suspected cutaneous leishmaniasis in Iran. Trop. Med. Int. Health, 2019, 24(1): 127-128. * Correspondent author. PMID: 30307678. PDF doi:10.1111/tmi.13168
  90. Maslov, D.A., Opperdoes, F.R., Kostygov, A.Y., Hashimi, H., Lukeš, J., Yurchenko, V.* Recent advances in trypanosomatid research: genome organization, expression, metabolism, taxonomy, and evolution. Parasitology, 2019, 146: 1-27. * Correspondent author. PMID: 29898792. PDF doi:10.1017/S0031182018000951
  91. 2018

  92. Grybchuk, D., Kostygov, A.Y., Macedo, D.H., Votýpka, J., Lukeš, J., Yurchenko, V.* RNA viruses in Blechomonas (Trypanosomatidae) and evolution of Leishmaniavirus. mBio, 2018, 9(5): e01932-18. * Correspondent author. PMID: 30327446. PDF doi:10.1128/mBio.01932-18
  93. Frolov, A., Malysheva, M., Ganyukova, A., Yurchenko, V., Kostygov, A.Y. Obligate development of Blastocrithidia papi (Trypanosomatidae) in the Malpighian tubules of Pyrrhocoris apterus (Hemiptera) and coordination of host-parasite life cycles. PLoS One, 2018, 13(9): e0204467. PMID: 30261003. PDF doi:10.1371/journal.pone.0204467
  94. Zhao, N., Sebastiano, V., Moshkina, N., Mena, N., Hultquist, J., Jimenez-Morales, D., Ma, Y., Rialdi, A., Albrecht, R., Fenouil, R., Sánchez-Aparicio, M.T., Ayllon, J., Ravisankar, S., Haddad, B., Ho, S.-Y., Low, D., Jin, J., Yurchenko, V., Prinjha, R., Tarakhovsky, A., Squatrito, M., Pinto, D., Kimaada, A., Byun, M., Laird Smith, M., Sebra, R., Guccione, E., Tumpey, T., Krogan, N., Greenbaum, B., van Bakel. H., García-Sastre, A., Marazzi I. Influenza virus infection causes global RNAPII termination defects. Nat. Struct. Mol. Biol., 2018, 25, 885-893. PMID: 30177761. PDF doi:10.1038/s41594-018-0124-7
  95. Harmer, J., Yurchenko, V., Nenarokova, A., Lukeš, J., Ginger, M. Farming, slaving and enslavement: histories of endosymbioses during kinetoplastid evolution. Parasitology, 2018, 145(10): 1311-1323. (Cover paper). PMID: 29895336. PDF doi:10.1017/S0031182018000781
  96. Silva, F., Kostygov, A.Y., Spodareva, V., Butenko, A., Tossou, R., Lukeš, J., Yurchenko, V., Alves, J. The reduced genome of Candidatus Kinetoplastibacterium sorsogonicusi, the endosymbiont of Kentomonas sorsogonicus (Trypanosomatidae): loss of the heme synthesis pathway. Parasitology, 2018, 145(10): 1287-1293. PMID: 29642956. PDF doi:10.1017/S003118201800046X
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  98. Spodareva, V., Grybchuk-Ieremenko, A., Losev, A., Votýpka, J., Lukeš, J., Yurchenko, V.*, Kostygov, A.Y.* Diversity and evolution of anuran trypanosomes: insights from the study of European species. Parasit. Vectors, 2018, 11: 447. * Co-correspondent authors. PMID: 30071897. PDF doi:10.1186/s13071-018-3023-1
  99. Lukša, J., Vepštaite-Monstaviče, I., Yurchenko, V., Serva, S., Serviene, E. High content analysis of sea buckthorn, black chokeberry, red and white currants microbiota - a pilot study. Food Res Int, 2018, 111: 597-606. PMID: 30007724. PDF doi:10.1016/j.foodres.2018.05.060
  100. Yang, Y., Gao, Y., Zlatanou, A., Tateishi, S., Yurchenko, V., Rogozin, I., Vaziri, C. Diverse roles of RAD18 and Y-family DNA polymerases in tumorigenesis. Cell Cycle, 2018, 17 (7): 833-843. PMID: 29683380. PDF doi:10.1080/15384101.2018.1456296
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  102. Rogozin, I., Goncearenco, A., Lada, A., De, S., Yurchenko, V., Nudelman, G., Panchenko, A., Cooper, D., Pavlov, Y. DNA polymerase η mutational signatures are found in a variety of different types of cancer. Cell Cycle, 2018, 17(3): 348-355. PMID: 29139326. PDF doi:10.1080/15384101.2017.1404208
  103. Záhonová, K., Petrželková, R., Valach, M., Yazaki, E., Tikhonenkov, D., Butenko, A., Janouškovec, J., Hrdá, Š., Klimeš, V., Burger, G., Inagaki, Y., Keeling, P., Hampl, V., Flegontov, P., Yurchenko, V., Eliáš, M. Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. Sci. Rep., 2018, 8: 5239. PMID: 29588502. PDF doi:10.1038/s41598-018-23575-0
  104. Grybchuk, D., Kostygov, A.Y., Macedo, D.H., d'Avila-Levy, C.M., Yurchenko, V.* RNA viruses in trypanosomatid parasites: a historical overview. Mem. Inst. Oswaldo Cruz, 2018, 113(4): e170487. * Correspondent author. PMID: 29513877. PDF doi:10.1590/0074-02760170487
  105. Ishemgulova, A., Hlaváčová, J., Majerová, K., Butenko, A., Lukeš, J., Votýpka, J., Volf, P., Yurchenko, V.* CRISPR/Cas9 in Leishmania mexicana: a case study of LmxBTN1. PLoS One, 2018, 13(2): e0192723. * Correspondent author. PMID: 29438445. PDF doi:10.1371/journal.pone.0192723
  106. Gerasimov, E.D., Gasparyan, A.A., Kaurov, I., Tichý, B., Logacheva, M.D., Kolesnikov, A.A., Lukeš, J., Yurchenko, V., Zimmer. S.L., Flegontov, P. Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool. Nucl. Acids Res., 2018, 46(2): 765-781. PMID: 29220521. PDF doi:10.1093/nar/gkx1202
  107. Butenko, A., da Silva Vieira, T., Frolov, A.O., Opperdoes, F.R., Soares, R.P., Kostygov, A.Y., Lukeš, J., Yurchenko, V.* Leptomonas pyrrhocoris: genomic insight into parasite's physiology. Curr. Genomics, 2018, 19(2): 150-156. * Correspondent author. PMID: 29491743. PDF doi:10.2174/1389202918666170815143331
  108. Grybchuk, D., Akopyants. N.S., Kostygov, A.Y., Konovalovas, A., Lye, L.-F., Dobson, D.E., Zangger, H., Fasel. N., Butenko, A., Frolov. A.O., Votýpka, J., d'Avila-Levy, C.M., Kulich, P., Moravcová, J., Plevka, P., Rogozin, I.B., Serva, S., Lukeš, J., Beverley, S.M.*, Yurchenko, V.* Viral discovery and diversity in trypanosomatid protozoa with a focus on relatives of the human parasite Leishmania. Proc. Natl. Acad. Sci. USA, 2018, 115(3): E506-E515. * Co-correspondent authors. PMID: 29284754. PDF doi:10.1073/pnas.1717806115
  109. Vepštaitė-Monstavičė, I., Lukša, J., Stanevičienė, R., Strazdaitė-Žielienė, Ž., Yurchenko, V., Serva, S., Servienė, E. Distribution of apple and blackcurrant microbiota in Lithuania and the Czech Republic. Microbiol. Res., 2018, 206: 1-8. PMID: 29146247. PDF doi:10.1016/j.micres.2017.09.004
  110. 2017

  111. Skalický, T., Dobáková, E., Wheeler, R., Tesařová, M., Flegontov, P., Jirsová, D., Votýpka, J., Yurchenko, V., Ayala, F., Lukeš, J. Extensive flagellar remodeling during the complex life cycle of Paratrypanosoma, an early-branching trypanosomatid. Proc. Natl. Acad. Sci. USA, 2017, 114: 11757-11762. PMID: 29078369. PDF doi:10.1073/pnas.1712311114
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  113. Ishemgulova, A., Kraeva, N., Hlaváčová, J., Zimmer, S., Butenko, A., Podešvová, L., Leštinová, T., Lukeš, J., Kostygov, A.Y., Votýpka, J., Volf, P., Yurchenko, V.* A putative ATP/GTP binding protein affects Leishmania mexicana growth in insect vectors and vertebrate hosts. PLoS Negl. Trop. Dis., 2017, 11(7): e0005782. * Correspondent author. PMID: 28742133. PDF doi:10.1371/journal.pntd.0005782
  114. Lukša, J., Ravoitytė, B., Konovalovas, A., Aitmanaitė, L., Butenko, A., Yurchenko, V., Serva, S., Servienė, E. Different metabolic pathways are involved in response of Saccharomyces cerevisiae to L-A and M viruses. Toxins, 2017, 9: e233. PMID: 28757599. PDF doi:10.3390/toxins9080233
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  120. 2016

  121. d'Avila-Levy, C., Yurchenko, V., Votýpka, J., Grellier, P. Protist collections: essential for future research. Trends Parasitol., 2016, 32: 840-842. PMID: 27612652. PDF doi:10.1016/j.pt.2016.08.001
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  128. Yurchenko, V.*, Kostygov, A.Y., Havlová, J., Grybchuk-Ieremenko, A., Ševčíková, T., Lukeš, J., Ševčík, J., Votýpka, J.* Diversity of trypanosomatids in cockroaches and the description of Herpetomonas tarakana sp. n. J. Euk. Microbiol., 2016, 63: 198-209. * Co-correspondent authors. PMID: 26352484. PDF doi:10.1111/jeu.12268
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  131. d'Avila-Levy, C., Boucinha, C., Kostygov, A.Y., Santos, H. L. C., Morelli, K. A., Grybchuk-Ieremenko, A., Duval, L., Votýpka, J., Yurchenko, V., Grellier, P., Lukeš, J. Exploring environmental diversity of kinetoplastid flagellates in the high-throughput DNA sequencing era. Mem Inst Oswaldo Cruz, 2015, 110(8): 956-965. PMID: 26602872. PDF doi:10.1590/0074-02760150253
  132. Kozminsky, E., Kraeva, N., Ishemgulova, A., Dobáková, E., Lukeš, J., Kment, P., Yurchenko, V., Votýpka, J., Maslov, D. Host-specificity of monoxenous trypanosomatids: statistical analysis of the distribution and transmission patterns of the parasites from Neotropical Heteroptera. Protist, 2015, 166(5): 551-568. PMID: 26466163. PDF doi:10.1016/j.protis.2015.08.004
  133. Kraeva, N., Butenko, A., Hlaváčová, J., Kostygov, A.Y., Myškova, J., Grybchuk, D., Leštinová, T., Votýpka, J., Volf, P., Opperdoes, F., Flegontov, P., Lukeš, J., Yurchenko, V.* Leptomonas seymouri: adaptations to the dixenous life cycle analyzed by genome sequencing, transcriptome profiling and co-infection with Leishmania donovani. PLoS Path., 2015, 11(8): e1005127. * Correspondent author. PMID: 226317207. PDF doi:10.1371/journal.ppat.1005127
  134. Hamilton, P., Votýpka, J., Dostálová, A., Yurchenko, V., Bird, N., Lukeš, J., Lemaitre, B., Perlman, S. Infection dynamics and immune response in a newly described Drosophila-trypanosomatid association. mBio, 2015, 6(5): e01356-15. PMID: 26374124. PDF doi:10.1128/mBio.01356-15
  135. Votýpka, J., d'Avila-Levy, C., Grellier, P., Maslov, D., Lukeš, J., Yurchenko, V.* New approaches to systematics of Trypanosomatidae: criteria for taxonomic (re)description. Trends Parasitol., 2015, 31: 460-469. * Correspondent author. PMID: 26433249. PDF doi:10.1016/j.pt.2015.06.015
  136. Losev, A., Grybchuk-Ieremenko, A., Kostygov, A.Y., Lukeš, J., Yurchenko, V.* Host specificity, pathogenicity and mixed infections of trypanoplasms from freshwater fishes. Parasitol. Res., 2015, 114:1071–1078. * Correspondent author. PMID: 25544706. PDF doi:10.1007/s00436-014-4277-y
  137. 2014

  138. Kraeva, N., Ishemgulova, A., Lukeš, J., Yurchenko, V.* Tetracycline-inducible gene expression system in Leishmania mexicana. Mol. Biochem. Parasitol., 2014, 198: 11-13. * Correspondent author. PMID: 25461484. PDF doi:10.1016/j.molbiopara.2014.11.002
  139. Grybchuk-Ieremenko, A., Losev, A., Kostygov, A.Y., Lukeš, J., Yurchenko, V.* High prevalence of trypanosome co-infections in freshwater fishes. Folia Parasitol., 2014, 61: 495-504. * Correspondent author. PMID: 25651690. PDF doi:10.14411/fp.2014.064
  140. Votýpka, J., Kostygov, A.Y., Kraeva, N., Grybchuk-Ieremenko, A., Tesařová, M., Grybchuk, D., Lukeš, J., Yurchenko, V.* Kentomonas gen. n., a new genus of endosymbiont-containing trypanosomatids of Strigomonadinae subfam. n. Protist, 2014, 165: 825-838. * Correspondent author. PMID: 25460233. PDF doi:10.1016/j.protis.2014.09.002
  141. Chistyakova, L., Kostygov, A.Y., Kornilova, O., Yurchenko, V.* Reisolation and redescription of Balantidium duodeni Stein, 1867 (Litostomatea, Trichostomatia). Parasitol. Res., 2014, 113: 4207–4215. * Correspondent author. PMID: 25185665. PDF doi:10.1007/s00436-014-4096-1
  142. Kostygov, A.Y., Grybchuk-Ieremenko, A., Malysheva, M., Frolov, A., Yurchenko, V.* Molecular revision of the genus Wallaceina. Protist, 2014, 165: 594-604. * Correspondent author. PMID: 25113831. PDF doi:10.1016/j.protis.2014.07.001
  143. Lukeš, J., Skalický, T., Týč, J., Votýpka, J., Yurchenko, V. Evolution of parasitism in kinetoplastid flagellates. Mol. Biochem. Parasitol., 2014, 195: 115-122. PMID: 24893339. PDF doi:10.1016/j.molbiopara.2014.05.007
  144. Yurchenko, V.*, Votýpka, J., Tesařová, M., Klepetková, H., Kraeva, N., Jirků, M., Lukeš, J. Ultrastructure and molecular phylogeny of four new species of monoxenous trypanosomatids from flies (Diptera: Brachycera) with redefinition of the genus Wallaceina. Folia Parasitol., 2014, 61: 97-112. * Correspondent author. PMID: 24822316. PDF doi:10.14411/fp.2014.023
  145. Záhonová, K., Hadariová, L., Vacula, R., Yurchenko, V., Eliáš, M., Krajčovič, J., Vesteg, M. A small portion of plastid transcripts is polyadenylated in the flagellate Euglena gracilis. FEBS Lett., 2014, 588: 783-788. PMID: 24492004. PDF doi:10.1016/j.febslet.2014.01.034
  146. 2013

  147. Votýpka, J., Suková, E., Kraeva, N., Ishemgulova, A., Duží, I., Lukeš, J., Yurchenko, V.* Diversity of trypanosomatids (Kinetoplastea: Trypanosomatidae) parasitizing fleas (Insecta: Siphonaptera) and description of a new genus Blechomonas gen. n. Protist, 2013, 164: 763-781. * Correspondent author. PMID: 24113136. PDF doi:10.1016/j.protis.2013.08.002
  148. Maslov, D., Votýpka, J., Yurchenko, V., Lukeš, J. Diversity and evolution of insect trypanosomatids: all that is hidden shall be revealed. Trends Parasitol., 2013, 29: 43-52. PMID: 23246083. PDF doi:10.1016/j.pt.2012.11.001
  149. 2012

  150. Jirkú, M., Yurchenko, V., Lukeš, J., Maslov, D. New species of insect trypanosomatids from Costa Rica and the proposal for a new subfamily within the Trypanosomatidae. J. Euk. Microbiol., 2012, 59: 537-547. PMID: 22845426. PDF doi:10.1111/j.1550-7408.2012.00636.x
  151. Votýpka, J., Klepetkova, H., Yurchenko, V., Horak, A., Lukeš, J., Maslov, D. Cosmopolitan distribution of a trypanosomatids Leptomonas pyrrhocoris. Protist, 2012, 163: 616–631. PMID: 22341645. PDF doi:10.1016/j.protis.2011.12.004
  152. 2010

  153. Maslov, D., Yurchenko, V., Jirkú, M., Lukeš, J. Two new species of trypanosomatid parasites isolated from Heteroptera in Costa Rica. J. Euk. Microbiol., 2010, 57(2): 177-188. PMID: 20113381. PDF doi:10.1111/j.1550-7408.2009.00464.x
  154. Votýpka, J., Maslov, D.A., Yurchenko, V., Jirkú, M., Kment, P., Lun, Z.R., Lukeš, J. Probing into the diversity of trypanosomatid flagellates parasitizing insect hosts in South-West China reveals both endemism and global dispersal. Mol. Phylogenet. Evol., 2010, 54: 243-253. PMID: 19835965. PDF doi:10.1016/j.ympev.2009.10.014
  155. Yurchenko, V., Constant, S., Eisenmesser, E., Bukrinsky, M. Cyclophilin/CD147 interactions: a new target for anti-inflammatory therapeutics. Clin. Exp. Immunol., 2010, 160: 305–317. PMID: 20345978. PDF doi:10.1111/j.1365-2249.2010.04115.x
  156. 2009

  157. Yurchenko, V., Lukeš, J., Jirkú, M., Maslov, D. Selective recovery of the cultivation-prone components from mixed trypanosomatid infections: a case of several novel species isolated from Neotropical Heteroptera. Int. J. Syst. Evol. Microbiol., 2009, 59(Pt 4): 893-909. (Cover paper). PMID: 19329626. PDF doi:10.1099/ijs.0.001149-0
  158. Schlegel, J., Redzic, J., Porter, C., Yurchenko, V., Bukrinsky, M., Labeikovsky, W., Armstrong, G., Zhang, F., Isern, N., De Gregori, J., Hodges, R., Eisenmesser, E. Solution characterization of the extracellular region of CD147 and its interaction with its enzyme ligand cyclophilin A. J. Mol. Biol, 2009, 391(3): 518-535. PMID: 19500591. PDF doi:10.1016/j.jmb.2009.05.080
  159. 2008

  160. Yurchenko, V., Lukeš, J., Tesařová, M., Jirkú, M., Maslov, D. Morphological discordance of the new trypanosomatid species phylogenetically associated with the genus Crithidia. Protist, 2008, 159: 99-114. PMID: 17931968. PDF doi:10.1016/j.protis.2007.07.003
  161. Bouzahzah, B., Yurchenko, V., Nagajyothi, F., Hulit, J., Sadofsky, M, Braunstein, V.L., Mukherjee, S., Weiss, H., Machado, F., Lisanti, M.P., Tanowitz, H.B., Albanese, C. Regulation of host cell cyclin D1 by Trypanosoma cruzi in myoblasts. Cell Cycle, 2008, 7(4): 500-503. PMID: 18239452. PDF doi:10.4161/cc.7.4.5327
  162. Yurchenko, V.*, Xue, Z., Sherry, B, Bukrinsky, M.* Functional analysis of Leishmania major cyclophilin. Int. J. Parasitol., 2008, 38(6): 633-639. * Co-correspondent authors. PMID: 17991468. PDF doi:10.1016/j.ijpara.2007.10.001
  163. Yurchenko, V.*; Xue, Z.; Gama, V.; Matsuyama; S., Sadofsky, M.* Ku70 is stabilized by increased cellular SUMO. Biochem. Biophys Res. Commun., 2008, 366: 263-268. * Co-correspondent authors. PMID: 18062920. PDF doi:10.1016/j.bbrc.2007.11.136
  164. 2007

  165. Ivanov, A., Peng, H., Yurchenko, V., Yap, K., Negorev, D., Schultz, D., Psulkowsky, E., Fredericks, W., White, D., Maul, G., Sadofsky, M., Zhou, M.-M., Rauscher, 3rd, F. PHD domain-mediated E3 ligase activity directs intramolecular Sumoylation of an adjacent Bromodomain required for gene silencing. Mol. Cell, 2007, 28: 823-837. PMID: 18082607. PDF doi:10.1016/j.molcel.2007.11.012
  166. Pushkarsky, T., Yurchenko, V., Laborico, A., Bukrinsky, M. CD147 stimulates HIV-1 infection in a signal-independent fashion. Biochem. Biophys Res. Commun., 2007, 363(3): 495-499. PMID: 17888876. PDF doi:10.1016/j.bbrc.2007.08.192
  167. 2006

  168. Yurchenko, V., Lukeš, J., Jirkú, M., Zeledon, R. and Maslov, D.A. Leptomonas costaricensis sp. n. (Kinetoplastea: Trypanosomatidae), a member of the novel phylogenetic group of insect trypanosomatids closely related to the genus Leishmania. Parasitology, 2006, 133: 537-546. (Cover paper). PMID: 16834819. PDF doi:10.1017/s0031182006000746
  169. Yurchenko, V., Lukeš, J., Xu, X. and Maslov, D.A. An integrated morphological and molecular approach to new species descriptions in Trypanosomatidae: the case of Leptomonas podlipaevi sp. n., a parasite of Boisea rubrolineata (Hemiptera: Rhopalidae). J. Euk. Microbiol., 2006, 53: 103-111. PMID: 16579812. PDF doi:10.1111/j.1550-7408.2005.00078.x
  170. Yurchenko, V., Xue, Z. and Sadofsky, M. SUMO modification of human XRCC4 regulates its localization and function in DNA double-strand break repair. Mol. Cell Biol., 2006, 26(5): 1786-1794. PMID: 16478998. PDF doi:10.1128/mcb.26.5.1786-1794.2006
  171. Yurchenko, V., Constant, S., Bukrinsky, M. Dealing with the Family: CD147 interactions with cyclophilins. Immunology, 2006, 117(3): 301-309. PMID: 16476049. PDF doi:10.1111/j.1365-2567.2005.02316.x
  172. 2005

  173. Yurchenko V., Pushkarsky T., Li J.H., Dai W.W., Sherry B., Bukrinsky M. Regulation of CD147 cell surface expression: involvement of the proline residue in the CD147 transmembrane domain. J. Biol. Chem., 2005, 280(17): 17013-17019. PMID: 15671024. PDF doi:10.1074/jbc.m412851200
  174. Pushkarsky T., Yurchenko V., Vanpouille C., Brichacek B., Vaisman I., Hatakeyama S., Nakayama K., Sherry B., and Bukrinsky M. Cell surface expression of CD147/emmprin is regulated by cyclophilin 60. J. Biol. Chem., 2005, 280(30): 27866-27871. PMID: 15946952. PDF doi:10.1074/jbc.m503770200
  175. 2003

  176. Yurchenko V., Xue Z., Sadofsky M. The RAG1 N-terminal domain is an E3 ubiquitin ligase. Genes Dev., 2003, 17: 581-585. PMID: 12629039. PDF doi:10.1101/gad.1058103
  177. Klinov, D., Martynkina, L., Yurchenko, V., Demin, V., Streltsov, S., Gerasimov, Y., Vengerov, Y. Effect of supporting substrates on the structure of DNA and DNA-Trivaline complexes studied by Atomic Force Microscopy. J. Bioorg. Chem (Mosc), 2003, 29: 363-367. PMID: 12947761. PDF doi:10.1023/a:1024901318099
  178. Martinkina, L., Yurchenko, V., Vengerov, Y. Protein-free spreading method for electron microscopic studies of DNA compaction stimulated by interactions with histone H1 in surface films. In: Science, Technology and Education of Microscopy: an Overview (Ed. A. Mendez-Vilas). Microscopy Series, 2003, 1: 469-475 (ISBN "Microscopy" Series 84-607-6679-7, ISBN Vol. I: 84-607-6698-5). PDF
  179. 2002

  180. Yurchenko V., Zybarth G., O’Connor M., Dai W.W., Franchin G., Hao T., Guo H., Hung H.-C., Toole B., Gallay P., Sherry B., Bukrinsky M. Active-site residues of cyclophilin A are crucial for its signaling activity via CD147. J. Biol. Chem., 2002, 277(25): 22959-22965. PMID: 11943775. PDF doi:10.1074/jbc.m201593200
  181. 2001

  182. Merzlyak, E., Yurchenko, V., Kolesnikov, A., Alexandrov, K., Podlipaev, S., Maslov, D. Diversity and phylogeny of insect trypanosomatids based on small subunit rRNA genes: polyphyly of Leptomonas and Blastocrithidia. J. Euk. Microbiol., 2001, 48: 161-169. PMID: 12095103. PDF doi:10.1111/j.1550-7408.2001.tb00298.x
  183. Yurchenko, V.*, Kolesnikov, A. Minicircular kinetoplast DNA of Trypanosomatidae. Mol. Biol. (Mosc), 2001, 35: 3-13. * Correspondent author. PMID: 11234380. PDF doi:10.1023/a:1004813414607
  184. Yurchenko V., O’Connor M., Dai W.W., Guo H., Toole B., Sherry B., Bukrinsky M. CD147 is a signaling receptor for Cyclophilin B. Biochem. Biophys Res. Commun., 2001, 288: 786-788. PMID: 11688976. PDF doi:10.1006/bbrc.2001.5847
  185. Pushkarsky T., Zybarth G., Dubrovsky L., Yurchenko V., Tang H., Guo H., Toole B., Sherry B., Bukrinsky M. CD147 facilitates HIV-1 infection by interacting with virus-associated cyclophilin A. Proc. Natl. Acad. Sci. USA, 2001, 98: 6360-6365. PMID: 11353871. PDF doi:10.1073/pnas.111583198
  186. 2000

  187. Yurchenko, V., Kolesnikov, A.A., Lukeš, J. Phylogenetic analysis of Trypanosomatina (Protozoa: Kinetoplastida) based on minicircle conserved regions. Folia Parasitol., 2000, 47: 1-5. PMID: 10833008. PDF doi:10.14411/fp.2000.001
  188. Martinkina, L., Klinov, D., Kolesnikov, A., Yurchenko V., Streltsov, S., Neretina, T., Demin, V., Vengerov, Y. Atomic force and electron microscopy of high molecular weight circular DNA complexes with synthetic oligopeptide trivaline. J. Biomol. Struct. Dynamics, 2000, 17: 687-695. PMID: 10698106. PDF doi:10.1080/07391102.2000.10506559
  189. 1999

  190. Yurchenko, V.*, Merzlyak, E., Kolesnikov, A., Martinkina, L., Vengerov, Y. Structure of Leishmania minicircle kinetoplast DNA classes. J. Clin. Microbiol., 1999, 35: 1656-1657. * Correspondent author. PMID: 10328690. PDF
  191. Yurchenko, V., Hobza, R., Benada, O., Lukeš, J. Trypanosoma avium: large minicircles in the kinetoplast DNA. Exp. Parasitol., 1999, 92: 215-218. (Cover paper). PMID: 10403763. PDF doi:10.1006/expr.1999.4418
  192. Alexandrov, K., Simon, I., Yurchenko, V., Iakovenko, A., Rostkova, E., Scheidig, A.J., Goody, R. S. Characterization of the ternary complex between Rab7, REP-1 and Rab geranylgeranyl transferase Eur. J. Biochem., 1999, 265: 160-170. PMID: 10491170. PDF doi:10.1046/j.1432-1327.1999.00699.x
  193. 1998

  194. Yurchenko, V.*, Martinkina, L., Merzlyak, E., Vengerov, Y., Kolesnikov, A.* Characteristics of Trypanosoma scelopori kinetoplast DNA: conserved region of minicircle as a molecular-taxonomic feature. Mol. Biol. (Mosc), 1998, 32: 998-1003. * Co-correspondent authors. PMID: 9929877. PDF
  195. Aravin, A., Yurchenko, V., Merzlyak, E., Kolesnikov, A. The mitochondrial ND8 gene from Crithidia oncopelti is not pan-edited. FEBS Lett., 1998, 431: 457-460. PMID: 9714563. PDF doi:10.1016/s0014-5793(98)00813-8
  196. Martinkina, L., Kolesnikov, A., Streltsov, S., Yurchenko, V., Vengerov, Yu.Yu. Electron microscopic studies of compactization of circular DNA in model systems. II. Complexes of the synthetic peptide trivaline with high molecular weight circular DNA. Mol. Biol. (Mosc), 1998, 32: 504-509. PMID: 9785564. PDF
  197. Martinkina, L., Kolesnikov, A., Streltsov, S., Yurchenko, V., Vengerov, Y. Circular superhelixal DNA complexes with synthetic oligopeptide: unusual compact structures and influence of bent sequences on the result of compaction. J. Biomol. Struct. Dynamics, 1998, 15: 949-957. PMID: 9619516. PDF doi:10.1080/07391102.1998.10508215
  198. 1997

  199. Kolesnikov, A., Yurchenko, V., Martinkina, L., Shoenian, G. A new class of minicircular mitochondrial DNA in Leishmania tropica. Mol. Biol. (Mosc), 1997, 31: 458-462. PMID: 9297089. PDF
  200. Vengerov, Y., Martinkina, L., Bespalov, M., Streltsov, S., Yurchenko, V., Kolesnikov, A. Electron microscopic studies of compactization of circular DNA in model systems. I. Compact structure of complexes of the synthetic peptide trivaline with circular DNA, containing a sequence, causing a stationary bend in DNA. Mol. Biol. (Mosc), 1997, 31: 232-239. PMID: 9213750. PDF
  201. 1995

  202. Baron, L., Yurchenko, V., Kolesnikov, A. Structure of minicircle kinetoplast DNA from a river perch trypanosome. Mol. Biol. (Mosc), 1995, 29: 1341-1348. PMID: 8592504. PDF